species:   Scscl
pid:       PID1607
parent:    Ssc-milR-83
paralog:   
locus:     NW_001820818.1:871682-871748
matures:   ['UGUUGUGUCAUACCGAAAGAACU', 'UACUUUCGGUUGACACUGCAGG']
srr:       SRR12527896
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram NW_001820818.1:871682-871748

9 out of bounds
19 alignments
12 proper strand
10 stranded perfect matches

**********************                   ************************* 
UACUUUCGGUUGACACUGCAGGUCGCACAACAUCGCGGCAGGAUGUUGUGUCAUACCGAAAGAACUG
..((((((((((((((.(((.(((((........)))))....))).)))))).)))))))).....
-------------------------------------------UGUUGUGUCAUACCGAAAGAACU- l=23 a=7 c
UACUUUCGGUUGACACUGCAGG--------------------------------------------- l=22 a=0 c*
-------------------------------------------UGUUGUGUCAUACCGAAAGAACU- l=23 a=7 ma
UACUUUCGGUUGACACUGCAGG--------------------------------------------- l=22 a=0 ma*

----------------------------------------------UGUGUCAUACCGAAAGAACUG l=21 a=1 
-------------------------------------------UGUUGUGUCAUACCGAAAGAAC-- l=22 a=1 
-------------------------------------------UGUUGUGUuAUACCGAAAGAACU- l=23 a=1 
-------------------------------------------UGUUGUGUCAUACCGAAAGAACU- l=23 a=7 (c,ma)
-------------------------------------------UGUUGUGUCAUACCGAAAGAACc- l=23 a=1 
----------------UGCAGGUCGCACAACAUCGCGG----------------------------- l=22 a=1 

mb-01011
ax-1011011
ku-01
ss-101110101000
fn-101
